Online storage consists of three Lustre storage systems, each on a separate mount point. The Online volumes look like disk partitions from command line shells (although their architecture is more complicated). Users can use shell commands like "cd", "ls", "mkdir" within those volumes. The Online volumes are accessible from the Blue Waters login nodes, on the MOM nodes where jobs scripts are run, and from compute nodes. The Online storage volumes are also accessible through Globus Online via the ncsa#BlueWaters endpoint. All Online storage are Lustre file systems and the terms Lustre and Online are used interchangably.
Lustre (Online) File Systems
These are the three Lustre file systems mounted on Blue Waters.
/u - 2.2 PB with 36 OSTs
Visible as /u on Blue Waters command line.
Visible as ncsa#BlueWaters endpoint, /u path within Globus.
Your home directory will typically be /u/sciteam/<yourusername>.
You should use HOME for keeping source code, etc. For performance reasons, you should run from SCRATCH in your batch jobs, but HOME is accessible for batch jobs as well.
There is a quota on Lustre home for each user, for files stored in
/projects - 2.2 PB with 36 OSTs
Visible as /projects path on Blue Waters command line.
Visible as ncsa#BlueWaters endpoint, /projects path within Globus.
Space in projects should be used for sharing frequently used large files within a science team. Each team has space in
> id bob
(Bob's 3-character groupid is indicated in this example in the green box. Other groups might have different prefix letters instead of PRAC; University of Illinois users will have "ILL" and Great Lakes Consotrtium users will have "GLCPC" here, for instance.) In this toy example, bob's group directory would be /projects/sciteam/jaa/.
Lusture /projects has a group quota. By default it is 5 TB per group. All files within a group's project directory count against the group's quota. Any one user can use it all.
/scratch - 22 PB with 360 OSTs
Visible as /scratch on Blue Waters command line.
Visible as ncsa#BlueWaters endpoint, /scratch path within Globus.
Your pathname in scratch will be /scratch/sciteam/<yourusername>. You should use this directory for large job outputs and any other files that require high performance reading or writing. We suggest using properly set stripe counts and sizes for directories holding large files or set on a per file basis.
There are 2 motivations for setting the stripe count more than the default of 1: a large file or parallel access pattern (via MPI-IO, parallel HDF5, NetCDF or similar parallel i/o library). If your i/o pattern is not parallel, file-per-rank MPI, or constrained to a single compute node then stick with the default striping of 1 or no more than 4. Striping wide for non-parallel i/o will degrade your i/o performance. If the motivation for striping is only that the file is very large ( > 100 GB ) and the i/o pattern is not parallel, we suggest setting the stripe count to 2 or 4.
There are quotas on scratch. Although files are stored in per-user directories (/scratch/sciteam/<myusername>, quotas on scratch are by all files with the group code, no matter where under /scratch they are. The quota is 50 TB per group by default. The quota is shared; any one user can, for instance. store 40 TB in scratch but that will only leave 10 TB for the rest of the group.
Quotas in General
The quotas listed here are default for allocation groups on Blue Waters. If your project had larger data needs, then your quotas on the Blue Waters system should reflect that (see the "quota" command). For quota-related issues such as increases in limits or grace periods, please contact firstname.lastname@example.org.
Blue Waters filesystems are not currently backed up.
All applications should implement some form of checkpointing that limits loss from hardware or software failures on the system. As the node count of a job increases or the wallclock increases, the likelihood of an interruption to the job increases proportionally.
To assist with determination of a proper checkpoint interval (the time between checkpoints that will provide a balance between loss of data due to a job interruption and the time spent performing checkpoint IO) we provide a utility that reports a recommended checkpoint interval using recent data on node failures and system interrupts, the desired number of XE nodes, XK nodes or both and the time the application takes to perform a checkpoint. The formula used in the utility is equation 37 from the 2004 paper by J.T. Daly "A higher order estimate of the optimum checkpoint interval for restart dumps". A mean time to interruption (MTTI) is computed and used to calculate a checkpoint interval (time between checkpoints).
Please remove commas when entering the requested node counts. Note that the time to write a checkpoint file is in hours.