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Tandy Warnow

University of Illinois at Urbana-Champaign

Biological Sciences


Tandy Warnow (2017): Parallel Algorithms for Big-data Phylogenomics, Proteomics, and Metagenomics, 2017 Blue Waters Annual Report, pp184-185
Molloy, Erin K. and Warnow, Tandy (2017): To Include or Not to Include: The Impact of Gene Filtering on Species Tree Estimation Methods, Systematic Biology, Oxford University Press
Bret M. Boyd, Julie M. Allen, Nam-Phuong Nguyen, Andrew D. Sweet, Tandy Warnow, Michael D. Shapiro, Scott M. Villa, Sarah E. Bush, Dale H. Clayton, Kevin P. Johnson (2017): Phylogenomics using Target-Restricted Assembly Resolves Intrageneric Relationships of Parasitic Lice (Phthiraptera: Columbicola), Systematic Biology, Oxford University Press, Vol 66, Num 6, pp896–911
Julie M. Allen, Bret Boyd, Nam-Phuong Nguyen, Pranjal Vachaspati, Tandy Warnow, Daisie I. Huang, Patrick G. S. Grady, Kayce C. Bell, Quentin C. B. Cronk, Lawrence Mugisha, Barry R. Pittendrigh, M. Soledad Leonardi, David L. Reed, Kevin P. Johnson (2017): Phylogenomics from Whole Genome Sequences Using aTRAM, Systematic Biology, Oxford University Press, Vol 66, Num 5, pp786–798
P. Vachaspati and T. Warnow (2017): FastRFS: Fast and Accurate Robinson-Foulds Supertrees using Constrained Exact Optimization, Bioinformatics, Oxford University Press, Vol 33, Num 5, pp631-639


Tandy Warnow (2016): Advancing genome-scale phylogenomic analysis, 2016 Blue Waters Annual Report, pp242-243
Michael Nute, and Tandy Warnow (2016): Scaling Statistical Multiple Sequence Alignment to Large Datasets, BMC Genomics, Springer Nature, Vol 17, Num S10, pp764
Nam-phuong Nguyen, Michael Nute, Siavash Mirarab, and Tandy Warnow (2016): HIPPI: Highly Accurate Protein Family Classification with Ensembles of HMMs, BMC Genomics, Springer Nature, Vol 17, Num S10, pp765
Nam-Phuong Nguyen, Tandy Warnow, Mihai Pop, and Bryan White (2016): A Perspective on 16S rRNA Operational Taxonomic Unit Clustering Using Sequence Similarity, npj Biofilms and Microbiomes, Nature Publishing Group, Vol 2, pp16004