Juan Perilla

University of Illinois at Urbana-Champaign

Biophysics

2017

John E. Stone, Juan R. Perilla, C. Keith Cassidy, and Klaus Schulten (2017): GPU-Accelerated Molecular Dynamics Clustering Analysis with OpenACC, Elsevier, Parallel Programming with OpenACC, pp215--240
Juan R. Perilla, and Klaus Schulten (2017): Physical Properties of the HIV-1 Capsid from All-Atom Molecular Dynamics Simulations, Nature Communications, Springer Nature, Vol 8, pp15959
Juan R. Perilla, Gongpu Zhao, Manman Lu, Jiying Ning, Guangjin Hou, In-Ja L. Byeon, Angela M. Gronenborn, Tatyana Polenova, and Peijun Zhang (2017): CryoEM Structure Refinement by Integrating NMR Chemical Shifts with Molecular Dynamics Simulations, The Journal of Physical Chemistry B, American Chemical Society (ACS), Vol 121, Num 15, pp3853--3863
Frances J. D. Alvarez, Shaoda He, Juan R. Perilla, Sooin Jang, Klaus Schulten, Alan N. Engelman, Sjors H. W. Scheres, and Peijun Zhang (2017): CryoEM Structure of MxB Reveals a Novel Oligomerization Interface Critical for HIV Restriction, Science Advances, American Association for the Advancement of Science (AAAS), Vol 3, Num 9, ppe1701264

2016

Huilan Zhang, Guangjin Hou, Manman Lu, Jinwoo Ahn, In-Ja L. Byeon, Christopher J. Langmead, Juan R. Perilla, Ivan Hung, Peter L. Gor'kov, Zhehong Gan, William W. Brey, David A. Case, Klaus Schulten, Angela M. Gronenborn, and Tatyana Polenova (2016): HIV-1 Capsid Function Is Regulated by Dynamics: Quantitative Atomic-Resolution Insights by Integrating Magic-Angle-Spinning NMR, QM/MM, and MD, Journal of the American Chemical Society, American Chemical Society (ACS), Vol 138, Num 42, pp14066--14075
Chuang Liu and Juan R. Perilla and Jiying Ning and Manman Lu and Guangjin Hou and Ruben Ramalho and Benjamin A. Himes and Gongpu Zhao and Gregory J. Bedwell and In-Ja Byeon and Jinwoo Ahn and Angela M. Gronenborn and Peter E. Prevelige and Itay Rousso and Christopher Aiken and Tatyana Polenova and Klaus Schulten and Peijun Zhang (2016): Cyclophilin a Stabilizes the HIV-1 Capsid Through a Novel Non-Canonical Binding Site, Nature Communications, Nature Publishing Group, Vol 7, pp10714

2015

Boon Chong Goh, Juan R. Perilla, Matthew R. England, Katrina J. Heyrana, Rebecca C. Craven, and Klaus Schulten (2015): Atomic Modeling of an Immature Retroviral Lattice Using Molecular Dynamics and Mutagenesis, Structure, Elsevier BV, Vol 23, Num 8, pp1414--1425
C Keith Cassidy, Benjamin A Himes, Frances J Alvarez, Jun Ma, Gongpu Zhao, Juan R Perilla, Klaus Schulten, and Peijun Zhang (2015): CryoEM and Computer Simulations Reveal a Novel Kinase Conformational Switch in Bacterial Chemotaxis Signaling, eLife, eLife Sciences Organisation, Ltd., Vol 4
Juan R Perilla, Boon Chong Goh, C Keith Cassidy, Bo Liu, Rafael C Bernardi, Till Rudack, Hang Yu, Zhe Wu, and Klaus Schulten (2015): Molecular Dynamics Simulations of Large Macromolecular Complexes, Current Opinion in Structural Biology, Elsevier BV, Vol 31, pp64--74

2013

Gongpu Zhao, Juan R. Perilla, Ernest L. Yufenyuy, Xin Meng, Bo Chen, Jiying Ning, Jinwoo Ahn, Angela M. Gronenborn, Klaus Schulten, Christopher Aiken, and Peijun Zhang (2013): Mature HIV-1 Capsid Structure by Cryo-Electron Microscopy and All-Atom Molecular Dynamics, Nature, Nature Publishing Group, Vol 497, Num 7451, pp643--646