Ilias Tagkopoulos

University of California, Davis

Biophysics

2017

Minseung Kim, Ameen Eetemadi, and Ilias Tagkopoulos (2017): DeepPep: Deep Proteome Inference from Peptide Profiles, PLOS Computational Biology, Public Library of Science (PLoS), Vol 13, Num 9, ppe1005661

2016

Minseung Kim, Navneet Rai, Violeta Zorraquino, and Ilias Tagkopoulos (2016): Multi-Omics Integration Accurately Predicts Cellular State in Unexplored Conditions for Escherichia Coli, Nature Communications, Springer Nature, Vol 7, pp13090

2013

Andreas Pavlogiannis, Vadim Mozhayskiy, and Ilias Tagkopoulos (2013): A Flood-Based Information Flow Analysis and Network Minimization Method for Gene Regulatory Networks, BMC Bioinformatics, Springer Nature, Vol 14, Num 1, pp137
Vadim Mozhayskiy, and Ilias Tagkopoulos (2013): Microbial Evolution in Vivo and in Silico: Methods and Applications, Integr. Biol., Royal Society of Chemistry (RSC), Vol 5, Num 2, pp262--277

2012

Vadim Mozhayskiy, and Ilias Tagkopoulos (2012): Horizontal Gene Transfer Dynamics and Distribution of Fitness Effects During Microbial in Silico Evolution, BMC Bioinformatics, Springer Nature, Vol 13, Num Suppl 10, ppS13
Vadim Mozhayskiy, and Ilias Tagkopoulos (2012): Guided Evolution of in Silico Microbial Populations in Complex Environments Accelerates Evolutionary Rates Through a Step-Wise Adaptation, BMC Bioinformatics, Springer Nature, Vol 13, Num Suppl 10, ppS10

2011

Vadim Mozhayskiy, and Ilias Tagkopoulos (2011): In Silico Evolution of Multi-Scale Microbial Systems in the Presence of Mobile Genetic Elements and Horizontal Gene Transfer, Bioinformatics Research and Applications: 7th International Symposium (ISBRA 2011) Proceedings, Springer Science + Business Media, pp262--273, Changsha, China
Vadim Mozhayskiy, Bob Miller, Kwan-Liu Ma, and Ilias Tagkopoulos (2011): A Scalable Multi-Scale Framework for Parallel Simulation and Visualization of Microbial Evolution, Proceedings of the 2011 TeraGrid Conference on Extreme Digital Discovery (TG '11), Association for Computing Machinery (ACM), Salt Lake City, Utah, U.S.A.